Family GP001867


Family ID GP001867  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 40%)
GP001867 (57)
2
(plant-specificity: 30%)
GP020531 (35) ,
(plant-specificity: 98%)
GP026341 (6) ,
(plant-specificity: 100%)
GP027440 (5) , GP029087 (4) , GP031887 (3)
3
(plant-specificity: 57%)
GP048543 (14) ,
(plant-specificity: 25%)
GP050904 (8) ,
(plant-specificity: 98%)
GP052659 (6) ,
(plant-specificity: 16%)
GP052295 (6) ,
(plant-specificity: 100%)
GP054028 (5) , GP056167 (4) , GP067862 (4) , GP130247 (3) , GP059821 (3)
4
(plant-specificity: 57%)
GP078595 (14) ,
(plant-specificity: 25%)
GP081511 (8) ,
(plant-specificity: 98%)
GP083674 (6) ,
(plant-specificity: 16%)
GP083313 (6) ,
(plant-specificity: 100%)
GP085430 (5) , GP088107 (4) , GP102611 (4) , GP147241 (3) , GP092663 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 57
Species Count (w/o splice) Count (w/ splice)
6 6
1 3
48 48


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
57 55 (96%) 40 (70%) [110; 415; 1450] ~545 2372 167