Family GP003988


Family ID GP003988  add to my list RDF
Family name Maternal effect embryo arrest 14 homologs family   suggest a name
Synonym(s) MEE14
Curation status ?
Found in Embryophyta plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Maternal effect embryo arrest 14 homologs family (plant-specificity: 100%)
GP003988 (56)
2
(plant-specificity: 100%)
GP020958 (49) , GP114210 (7)
3
(plant-specificity: 100%)
GP045997 (49) , GP122773 (7)
4
(plant-specificity: 100%)
GP075648 (49) , GP141277 (4) , GP144762 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 56
Species Count (w/o splice) Count (w/ splice)
2 7
1 1
2 2
1 1
2 2
2 2
3 3
2 2
2 2
1 1
1 1
1 1
1 3
1 1
1 1
1 1
1 1
1 1
1 2
1 1
3 3
1 2
1 1
1 1
1 1
2 2
1 1
2 2
1 2
1 1
1 1
2 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
56 46 (82%) 46 (82%) [129; 209; 326] ~209 496 156


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
56 46 (82%) 0.746055 0.665906 0.271817



for (default: all):
Species



(click on the button above to get your homolog prediction list)