Family GP000392


Family ID GP000392  add to my list RDF
Family name Gibberellin regulated family   suggest a name
Cross-reference(s) PMID:
GASA, a gibberellin-regulated gene family from Arabidopsis thaliana related to the tomato GAST1 gene.
7727751 PMID:
Expression patterns of GASA genes in Arabidopsis thaliana: the GASA4 gene is up-regulated by gibberellins in meristematic regions.
9520278
Family Ontology
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N/A
Curation status ?
Found in Tracheophyta plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Gibberellin regulated family (plant-specificity: 100%)
GP000392 (577)
2 GP015795 (573) , GP118691 (4)
3 GP040952 (570) , GP126111 (4)
4 GP070445 (559) ,
(plant-specificity: 100%)
GP080336 (8) , GP149588 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 577
Species Count (w/o splice) Count (w/ splice)
11 11
25 25
9 9
17 17
13 13
3 3
3 3
11 15
8 8
12 12
13 13
15 22
13 13
19 19
17 17
20 20
14 14
15 21
12 12
17 17
26 34
16 16
23 36
14 14
19 19
13 15
27 27
11 11
26 26
11 11
24 24
36 43
17 17


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Gibberellin regulated protein
IPR003854
Gibberellin regulated protein Family 93 (534) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR003854


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
577 530 (92%) 526 (91%) [22; 103; 1494] ~110 1831 56




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