Family GP000019


Family ID GP000019  add to my list RDF
Family name NPF, NRT1/PTR FAMILY   suggest a name
Family Ontology
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N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
NPF, NRT1/PTR FAMILY
GP000019 (3195)
2 GP015062 (3058) , GP109031 (99) ,
(plant-specificity: 71%)
GP025319 (13) , GP113126 (5) ,
(plant-specificity: 100%)
GP113841 (5) , GP028356 (4) , GP115741 (4) , GP030569 (3) , GP117562 (3)
3 GP039792 (3058) , GP118830 (99) ,
(plant-specificity: 85%)
GP051360 (6) , GP124411 (5) ,
(plant-specificity: 96%)
GP124736 (5) ,
(plant-specificity: 100%)
GP125435 (5) , GP125794 (4) , GP055315 (4) , GP058161 (3) , GP130764 (3)
4 GP069318 (3031) , GP071735 (99) , GP134862 (11) ,
(plant-specificity: 83%)
GP136077 (8) ,
(plant-specificity: 14%)
GP137052 (7) ,
(plant-specificity: 73%)
GP138170 (6) ,
(plant-specificity: 85%)
GP082117 (6) , GP139168 (5) ,
(plant-specificity: 96%)
GP139672 (5) ,
(plant-specificity: 100%)
GP140506 (5) , GP140951 (4) , GP087163 (4) , GP090832 (3) , GP147889 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 3195
Species Count (w/o splice) Count (w/ splice)
2 2
4 4
27 37
52 52
137 137
62 62
72 72
63 63
104 104
68 68
109 145
86 90
80 80
111 111
84 128
98 103
105 105
91 91
95 95
55 55
58 61
61 61
111 111
80 129
68 68
88 135
65 65
80 80
61 74
163 163
103 103
134 135
68 68
85 94
140 170
74 74


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Proton-dependent oligopeptide transporter family
IPR000109
Proton-dependent oligopeptide transporter family Family 85 (2705) No
Protein of unknown function DUF1264
IPR010686
Protein of unknown function DUF1264 Family 3 (94) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Major facilitator superfamily domain, general substrate transporter
IPR016196
Major facilitator superfamily domain, general substrate transporter Domain 82 (2619) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016196 IPR000109


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Species
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