Family GP000520


Family ID GP000520  add to my list RDF
Family name PR-10 family   suggest a name
Synonym(s) PR10, MLP-like , Bet v I allergen
Cross-reference(s) PMID:
Primary structures of two ribonucleases from ginseng calluses. New members of the PR-10 family of intracellular pathogenesis-related plant proteins.
9166900
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
PR-10 family (plant-specificity: 90%)
GP000520 (561)
2 GP015480 (442) ,
(plant-specificity: 100%)
GP020942 (107) ,
(plant-specificity: 100%)
GP110861 (12)
3 GP040207 (421) ,
(plant-specificity: 100%)
GP045977 (86) ,
(plant-specificity: 100%)
GP049082 (21) ,
(plant-specificity: 100%)
GP050787 (18) ,
(plant-specificity: 100%)
GP120784 (12) , GP125942 (4)
4 GP069679 (421) ,
(plant-specificity: 100%)
GP075627 (75) ,
(plant-specificity: 100%)
GP079606 (21) ,
(plant-specificity: 100%)
GP081393 (18) ,
(plant-specificity: 100%)
GP134387 (12) ,
(plant-specificity: 100%)
GP134716 (11) ,
(plant-specificity: 100%)
GP079995 (10)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 561
Species Count (w/o splice) Count (w/ splice)
11 12
8 8
18 18
5 5
6 6
7 7
14 14
8 8
8 8
7 7
13 13
13 13
6 8
10 11
24 24
14 14
11 11
18 18
3 3
19 19
43 54
20 20
25 28
29 29
14 14
7 8
60 60
17 17
19 23
14 14
20 20
24 28
19 19


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Bet v I type allergen
IPR024949
Bet v I type allergen Family 75 (423) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Bet v I domain
IPR000916
Bet v I domain Domain 96 (536) No
START-like domain
IPR023393
START-like domain Domain 99 (553) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR023393 IPR000916 IPR024949


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
561 534 (95%) 509 (91%) [38; 160; 402] ~157 1738 102




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