Family GP000309


Family ID GP000309  add to my list RDF
Family name Nuclear transcription factor Y family   suggest a name
Synonym(s) CCAAT-binding transcription factor, subunit B
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Nuclear transcription factor Y family (plant-specificity: 19%)
GP000309 (557)
2 GP015358 (557)
3 GP040248 (450) , GP044077 (107)
4 GP070089 (449) , GP073458 (98) , GP135551 (9)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 557
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
9 9
6 6
15 15
13 13
12 12
8 8
11 25
6 12
8 8
9 9
16 44
9 11
8 8
11 11
10 10
7 7
10 21
7 7
23 23
17 57
7 7
13 59
6 6
17 17
7 13
17 17
7 7
12 15
8 8
9 19
21 57
13 13


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
CCAAT-binding transcription factor, subunit B
IPR001289
CCAAT-binding transcription factor, subunit B Family 92 (513) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
CCAAT-binding factor, conserved site
IPR018362
CCAAT-binding factor, conserved site Conserved_site 70 (392) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001289 IPR018362


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
557 355 (64%) 339 (61%) [67; 290; 691] ~271 1954 120




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