Family GP004474


Family ID GP004474  add to my list RDF
Family name Sterile Apetala family   suggest a name
Synonym(s) SAP transcription factor
Cross-reference(s) PMID:
Arabidopsis STERILE APETALA, a multifunctional gene regulating inflorescence, flower, and ovule development.
10215627
Comment
Curation status ?
Found in Tracheophyta plant-specific
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Sterile Apetala family (plant-specificity: 100%)
GP004474 (49)
2
(plant-specificity: 100%)
GP021831 (49)
3
(plant-specificity: 100%)
GP046960 (46) , GP128519 (3)
4
(plant-specificity: 100%)
GP076766 (46) , GP144839 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 49
Species Count (w/o splice) Count (w/ splice)
1 1
6 6
1 1
2 2
4 4
1 1
1 1
1 1
1 1
3 3
1 1
1 1
2 2
1 1
2 2
2 2
1 1
1 1
2 2
1 1
6 6
1 1
1 1
1 1
1 2
2 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
F-box domain
IPR001810
F-box domain Domain 61 (30) No
WD40/YVTN repeat-like-containing domain
IPR015943
WD40/YVTN repeat-like-containing domain Domain 76 (37) No
WD40-repeat-containing domain
IPR017986
WD40-repeat-containing domain Domain 61 (30) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001810 IPR015943 IPR017986


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
49 48 (98%) 36 (73%) [52; 447; 870] ~367 1036 372