Family GP003924


Family ID GP003924  add to my list RDF
Family name Floricaula/leafy family   suggest a name
Synonym(s) LFY
Cross-reference(s) PMID:
Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation.
9482818 PMID:
LEAFY controls floral meristem identity in Arabidopsis.
1350515 PMID:
Diverse effects of overexpression of LEAFY and PTLF, a poplar (Populus) homolog of LEAFY/FLORICAULA, in transgenic poplar and Arabidopsis.
10849341 PMID:
UNIFOLIATA regulates leaf and flower morphogenesis in pea.
9259553
Family Ontology
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molecular_function
protein binding
GO:0005515 (2%) - protein binding
Curation status ?
Found in Embryophyta plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Floricaula/leafy family (plant-specificity: 100%)
GP003924 (49)
2
(plant-specificity: 100%)
GP020861 (49)
3
(plant-specificity: 100%)
GP045899 (49)
4
(plant-specificity: 100%)
GP075547 (49)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 49
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
2 2
1 1
1 1
1 1
2 2
2 2
1 1
1 1
1 1
1 1
2 5
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 2
1 1
1 1
1 1
2 2
1 1
3 3
2 2
1 1
1 1
1 1
2 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Floricaula/leafy protein
IPR002910
Floricaula/leafy protein Family 98 (48) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002910


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
49 45 (92%) 40 (82%) [99; 392; 637] ~354 864 339




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Species



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