Family GP000268


Family ID GP000268  add to my list RDF
Family name Zinc finger A20 and AN1 domain-containing stress-associated family   suggest a name
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Zinc finger A20 and AN1 domain-containing stress-associated family
GP000268 (549)
2 GP015332 (536) ,
(plant-specificity: 96%)
GP023751 (13)
3 GP039999 (536) ,
(plant-specificity: 96%)
GP049279 (13)
4 GP069504 (536) ,
(plant-specificity: 100%)
GP080423 (12)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 549
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
7 9
5 5
12 12
5 5
19 19
23 23
17 17
8 8
17 26
11 18
9 9
13 13
9 15
12 15
8 8
14 14
10 10
10 10
10 17
5 5
19 19
16 30
13 13
17 37
7 7
22 22
11 22
41 41
10 10
14 14
13 13
16 18
21 32
11 11


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Zinc finger, AN1-type
IPR000058
Zinc finger, AN1-type Domain 91 (500) No
Zinc finger, A20-type
IPR002653
Zinc finger, A20-type Domain 83 (453) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002653 IPR000058


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
549 457 (83%) 441 (80%) [43; 170; 448] ~166 1758 92




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