Family GP000370


Family ID GP000370  add to my list RDF
Family name Annexin family   suggest a name
Synonym(s) Annexin D, lipocortins
Cross-reference(s) PMID:
The annexins.
15059252 PMID:
Amino acid sequence analysis of the annexin super-gene family of proteins.
1646719 PMID:
Annexins: from structure to function.
9165068
Family Ontology
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molecular_function
calcium-dependent phospholipid binding
GO:0005544 (94%) - calcium-dependent phospholipid binding
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Annexin family
GP000370 (552)
2 GP015295 (552)
3 GP039972 (549) , GP128328 (3)
4 GP069579 (539) ,
(plant-specificity: 62%)
GP081944 (8) , GP144569 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 552
Species Count (w/o splice) Count (w/ splice)
3 3
7 12
4 4
8 8
6 6
14 14
11 11
9 9
11 11
10 12
11 12
10 10
12 12
12 19
11 13
17 17
10 10
12 12
22 22
8 9
12 12
23 23
14 36
13 13
15 26
10 10
12 12
12 20
44 44
18 18
23 25
13 13
13 13
29 46
15 15


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Annexin
IPR001464
Annexin Family 95 (522) No
Annexin, plant
IPR009118
Annexin, plant Family 45 (247) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Annexin repeat
IPR018502
Annexin repeat Repeat 94 (520) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001464 IPR018502
Annexin repeat, conserved site
IPR018252 IPR009118



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
552 474 (86%) 399 (72%) [48; 315; 570] ~277 1735 243