Family GP000477


Family ID GP000477  add to my list RDF
Family name Mpv17/PMP22 family   suggest a name
Cross-reference(s) PMID:
Arabidopsis 22-kilodalton peroxisomal membrane protein. Nucleotide sequence analysis and biochemical characterization.
10318708 PMID:
Localization of the tomato bushy stunt virus replication protein p33 reveals a peroxisome-to-endoplasmic reticulum sorting pathway.
16284309
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Mpv17/PMP22 family (plant-specificity: 9%)
GP000477 (547)
2
Peroxisomal membrane family
GP018662 (147) , GP017888 (125) ,
Peroxisomal membrane protein PMP22 subfamily
GP017604 (120) ,
(plant-specificity: 14%)
GP019969 (69) ,
(plant-specificity: 11%)
GP020245 (64) ,
(plant-specificity: 100%)
GP110781 (12) , GP114348 (4)
3 GP042565 (125) , GP042262 (120) , GP043405 (94) , GP044913 (69) ,
(plant-specificity: 11%)
GP045217 (64) , GP045127 (53) ,
(plant-specificity: 100%)
GP120912 (12)
4 GP072024 (125) , GP071693 (118) , GP072911 (92) , GP074531 (69) , GP075290 (56) , GP074757 (53) ,
(plant-specificity: 100%)
GP134528 (12) , GP137866 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 547
Species Count (w/o splice) Count (w/ splice)
5 5
12 12
14 14
12 15
7 7
15 15
8 8
13 13
7 7
12 12
11 11
9 13
9 12
7 7
11 11
8 11
7 8
10 10
14 14
12 12
12 12
10 14
12 12
37 37
13 40
14 14
19 40
9 9
14 14
10 18
21 21
9 9
17 18
12 12
12 13
28 35
12 12


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Mpv17/PMP22
IPR007248
Mpv17/PMP22 Family 74 (404) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR007248


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
547 463 (85%) 417 (76%) [31; 226; 735] ~237 2490 85




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