Family GP000049


Family ID GP000049  add to my list RDF
Family name Ubiquitin-conjugating superfamily   suggest a name
Cross-reference(s) PMID:
Polyubiquitin chains: polymeric protein signals.
15556404
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Ubiquitin-conjugating superfamily (plant-specificity: 9%)
GP000049 (3080)
2
Ubiquitin-conjugating family 1
GP015102 (2267) , GP015632 (412) ,
Ubiquitin-conjugating enzyme E2 variant family
GP016279 (224) , GP016733 (162) ,
(plant-specificity: 71%)
GP027441 (7) ,
(plant-specificity: 98%)
GP027016 (6) , GP115120 (4)
3 GP039825 (1908) , GP040294 (401) , GP040907 (224) , GP040840 (198) , GP041487 (150) , GP043402 (81) , GP043520 (81) ,
(plant-specificity: 100%)
GP121244 (11) ,
(plant-specificity: 71%)
GP054029 (7) ,
(plant-specificity: 98%)
GP058012 (6) , GP126114 (4) , GP127248 (4) ,
(plant-specificity: 84%)
GP128175 (5)
4
Ubiquitin-conjugating enzyme E2 D/E , H, A, I, C, N subfamily
GP069413 (1686) , GP069745 (399) , GP070302 (224) , GP070248 (198) ,
NEDD8-conjugating enzyme Ubc12 subfamily
GP070870 (150) ,
Ubiquitin-conjugating enzyme E2 W subfamily
GP071597 (104) , GP072910 (81) , GP073147 (79) , GP072564 (77) ,
(plant-specificity: 19%)
GP132701 (34) ,
(plant-specificity: 100%)
GP134883 (11) ,
(plant-specificity: 71%)
GP085431 (7) ,
(plant-specificity: 84%)
GP139053 (5) , GP141461 (4) , GP088291 (4) , GP143026 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 3080
Species Count (w/o splice) Count (w/ splice)
17 17
23 23
132 132
41 53
41 41
117 117
36 36
96 96
69 69
85 85
63 63
50 83
54 76
44 44
57 57
87 214
51 60
43 43
58 58
64 64
44 44
48 83
39 39
127 127
88 276
45 45
71 237
41 41
90 90
35 63
136 136
56 56
61 71
42 42
46 60
102 190
49 49


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No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ubiquitin-conjugating enzyme, E2
IPR000608
Ubiquitin-conjugating enzyme, E2 Domain 88 (2714) No
Ubiquitin-conjugating enzyme/RWD-like
IPR016135
Ubiquitin-conjugating enzyme/RWD-like Domain 91 (2801) No
Ubiquitin-conjugating enzyme, active site
IPR023313
Ubiquitin-conjugating enzyme, active site Active_site 57 (1761) No

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Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000608 IPR016135 IPR023313


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