Family GP000358


Family ID GP000358  add to my list RDF
Family name Hypothetical superfamily   suggest a name
Family Ontology
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N/A
Curation status ?
Found in Viridiplantae plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Hypothetical superfamily (plant-specificity: 100%)
GP000358 (530)
2
GRF transcription factor family
GP015336 (523) , GP036764 (3)
3 GP040004 (518) ,
(plant-specificity: 100%)
GP059060 (6)
4 GP072265 (262) , GP069722 (249) , GP136969 (7) , GP100150 (3) , GP091829 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 530
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
4 4
8 8
7 7
19 19
15 15
16 16
14 14
14 23
12 15
9 9
13 13
19 54
11 12
6 6
12 12
13 13
10 10
9 9
12 13
14 14
18 44
10 10
20 30
14 14
17 17
8 14
16 16
11 11
14 14
8 8
11 13
26 39
11 11


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
WRC
IPR014977
WRC Domain 85 (451) No
Glutamine-Leucine-Glutamine, QLQ
IPR014978
Glutamine-Leucine-Glutamine, QLQ Domain 81 (429) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR014977 IPR014978


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
530 424 (80%) 387 (73%) [49; 366; 1495] ~375 2220 144




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Species



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