Family GP000535


Family ID GP000535  add to my list RDF
Family name Oligopeptide transporter isp4-like family   suggest a name
Synonym(s) Tetrapeptide transporter, OPT1/isp4
Cross-reference(s) PMID:
An oligopeptide transporter gene family in Arabidopsis.
11788749
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Oligopeptide transporter isp4-like family (plant-specificity: 9%)
GP000535 (532)
2 GP015447 (530)
3 GP040104 (528)
4 GP069593 (527)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 532
Species Count (w/o splice) Count (w/ splice)
2 2
7 7
41 41
10 10
19 19
13 13
17 17
8 8
10 12
8 8
11 11
8 8
8 15
9 9
13 13
14 14
13 13
16 16
9 9
15 15
22 22
9 18
10 10
14 29
10 10
13 13
10 12
37 37
43 43
15 15
8 8
14 18
16 18
19 19


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Tetrapeptide transporter, OPT1/isp4
IPR004648
Tetrapeptide transporter, OPT1/isp4 Family 57 (304) Yes
Oligopeptide transporter, OPT superfamily
IPR004813
Oligopeptide transporter, OPT superfamily Family 92 (487) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004813 IPR004648


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
532 491 (92%) 340 (64%) [25; 691; 6298] ~571 10923 651