Family GP000472


Family ID GP000472  add to my list RDF
Family name Phosphoinositide phosphatase synaptojanin family   suggest a name
Cross-reference(s) PMID:
A novel class of evolutionarily conserved genes defined by piwi are essential for stem cell self-renewal.
9851978
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Phosphoinositide phosphatase synaptojanin family
GP000472 (538)
2 GP016146 (285) , GP016640 (176) ,
(plant-specificity: 9%)
GP019221 (72) , GP114179 (4)
3 GP040765 (285) , GP041244 (176) ,
(plant-specificity: 9%)
GP044061 (72) , GP125923 (4)
4 GP070187 (285) , GP070644 (174) , GP073589 (72) , GP141220 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 538
Species Count (w/o splice) Count (w/ splice)
3 3
4 4
7 7
11 13
9 9
18 18
7 7
16 16
15 15
13 13
11 11
13 19
9 10
11 11
10 10
12 26
10 10
8 8
5 5
13 13
6 6
9 13
12 12
17 17
16 55
8 8
14 47
6 6
15 15
11 15
25 25
19 19
14 15
6 6
8 9
20 33
9 9


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Synaptojanin, N-terminal
IPR002013
Synaptojanin, N-terminal Domain 82 (439) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002013


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
538 420 (78%) 291 (54%) [39; 601; 2382] ~635 4764 254