Family GP000459


Family ID GP000459  add to my list RDF
Family name Peptidase s1c, hrta/degp2/q/s family   suggest a name
Synonym(s) Putative protease Do-like, serine endopeptidase degp
Cross-reference(s) PMID:
Chloroplast and mitochondrial proteases in Arabidopsis. A proposed nomenclature.
11299370 PMID:
Identification and characterization of DegP, a serine protease associated with the luminal side of the thylakoid membrane.
9507020 PMID:
A chloroplast DegP2 protease performs the primary cleavage of the photodamaged D1 protein in plant photosystem II.
11179216
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Peptidase s1c, hrta/degp2/q/s family
GP000459 (528)
2 GP016020 (271) , GP015955 (255)
3 GP040600 (255) , GP041034 (213) , GP045619 (58)
4 GP070041 (255) , GP070436 (213) , GP075272 (58)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 528
Species Count (w/o splice) Count (w/ splice)
5 5
14 14
33 33
15 19
10 10
27 27
9 9
9 9
8 8
11 11
8 8
8 12
9 16
9 9
8 8
18 30
9 10
15 15
9 9
8 8
12 12
15 17
10 10
22 22
8 27
12 12
13 27
14 14
10 10
7 11
28 28
12 12
12 13
8 8
8 12
14 15
8 8


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Peptidase S1C
IPR001940
Peptidase S1C Family 74 (391) No
Peptidase S1C, Do
IPR011782
Peptidase S1C, Do Family 1 (3) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
PDZ domain
IPR001478
PDZ domain Domain 64 (336) No
Trypsin-like cysteine/serine peptidase domain
IPR009003
Trypsin-like cysteine/serine peptidase domain Domain 85 (449) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001478 IPR009003 IPR001940


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
528 453 (86%) 381 (72%) [40; 433; 1424] ~415 3195 145