Family GP000523


Family ID GP000523  add to my list RDF
Family name histone h4 family   suggest a name
Cross-reference(s) PMID:
The uni chromosome of Chlamydomonas: histone genes and nucleosome structure.
7479007
Family Ontology
Close Hide
N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
histone h4 family (plant-specificity: 9%)
GP000523 (518)
2 GP015426 (518)
3 GP040086 (518)
4 GP069577 (516)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 518
Species Count (w/o splice) Count (w/ splice)
2 2
33 33
41 41
13 13
3 3
29 29
9 9
13 13
15 15
15 15
10 10
11 11
13 13
26 26
12 12
17 49
11 11
6 6
14 14
14 14
7 7
8 10
6 6
5 5
16 16
8 8
12 12
6 6
11 11
8 8
13 13
9 9
14 14
9 9
12 13
20 21
11 11


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Histone H4
IPR001951
Histone H4 Family 94 (485) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Histone core
IPR007125
Histone core Domain 86 (445) No
Histone-fold
IPR009072
Histone-fold Domain 94 (486) No
Histone H4, conserved site
IPR019809
Histone H4, conserved site Conserved_site 86 (443) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR007125 IPR009072 IPR001951 IPR019809


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
518 481 (93%) 478 (92%) [34; 104; 574] ~110 1468 103




for (default: all):
Species



(click on the button above to get your homolog prediction list)