Family GP001362


Family ID GP001362  add to my list RDF
Family name Epidermal patterning factor family   suggest a name
Cross-reference(s) PMID:
Epidermal cell density is autoregulated via a secretory peptide, EPIDERMAL PATTERNING FACTOR 2 in Arabidopsis leaves.
19435754
Comment
Family Ontology
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molecular_function
nitronate monooxygenase activity
GO:0018580 (14%) - nitronate monooxygenase activity
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Epidermal patterning factor family (plant-specificity: 90%)
GP001362 (517)
2 GP018611 (229) , GP017367 (134) ,
(plant-specificity: 100%)
GP019034 (78) ,
(plant-specificity: 19%)
GP020689 (76)
3
(plant-specificity: 100%)
GP044117 (229) , GP042032 (134) , GP043832 (78) ,
(plant-specificity: 40%)
GP045701 (71) , GP128290 (3)
4 GP073649 (163) , GP071441 (134) , GP075351 (71) ,
(plant-specificity: 100%)
GP077586 (41) ,
(plant-specificity: 100%)
GP077797 (37) ,
(plant-specificity: 100%)
GP132817 (28) ,
(plant-specificity: 100%)
GP133734 (15) ,
(plant-specificity: 100%)
GP134121 (13) ,
(plant-specificity: 100%)
GP136049 (8) , GP144509 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 517
Species Count (w/o splice) Count (w/ splice)
2 2
11 16
8 8
23 23
9 9
17 17
10 10
7 7
3 3
13 15
10 11
9 9
13 13
18 29
11 12
9 9
12 12
14 14
10 10
11 13
11 11
12 12
23 38
14 14
15 18
17 17
15 15
13 14
11 11
16 16
19 19
11 11
20 21
33 41
17 17


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


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Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
517 467 (90%) 457 (88%) [29; 128; 859] ~147 1499 53




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