Family GP000058


Family ID GP000058  add to my list RDF
Family name Dehydrogenase/reductase (SDR) superfamily   suggest a name
Cross-reference(s) PMID:
Short-chain dehydrogenases/reductases (SDR).
7742302
Family Ontology
Close Hide
N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Dehydrogenase/reductase (SDR) superfamily (plant-specificity: 9%)
GP000058 (3132)
2 GP015193 (913) , GP015536 (838) , GP015846 (236) , GP016180 (200) , GP017738 (162) , GP016755 (136) , GP017569 (124) , GP018042 (91) , GP017695 (98) , GP019000 (84) , GP020845 (75) , GP019676 (73) , GP109151 (69) ,
(plant-specificity: 70%)
GP110855 (11) , GP112267 (4) , GP113197 (5) , GP115642 (2) , GP032562 (3)
3 GP039908 (748) , GP040214 (561) , GP040828 (200) , GP041080 (178) , GP042602 (136) , GP041413 (150) , GP041917 (127) , GP042221 (124) , GP043115 (95) , GP042319 (103) ,
1-acylglycerone phosphate reductase family
GP042318 (98) , GP042724 (91) , GP043791 (84) , GP044581 (73) , GP045326 (69) , GP045880 (64) , GP045471 (59) , GP046452 (47) ,
(plant-specificity: 90%)
GP119231 (39) ,
(plant-specificity: 100%)
GP120322 (16) ,
(plant-specificity: 70%)
GP049572 (11) , GP121040 (11) ,
(plant-specificity: 30%)
GP121048 (20) , GP123994 (4) , GP124528 (5) , GP127939 (2) , GP058023 (3) , GP060692 (3) , GP128906 (3)
4 GP069421 (741) ,
Tropinone reductase family
GP069684 (470) , GP070227 (200) , GP070474 (178) , GP070816 (150) ,
Ketoacyl-ACP Reductase family
GP072069 (136) ,
3-oxoacyl-[acyl-carrier protein] reductase family
GP071405 (127) , GP071760 (103) , GP072842 (98) , GP072205 (91) , GP072614 (85) , GP073308 (84) , GP072737 (78) , GP074158 (73) , GP073207 (72) , GP074946 (69) , GP075101 (59) , GP075524 (55) , GP077744 (52) , GP076157 (46) ,
(plant-specificity: 80%)
GP132851 (27) ,
(plant-specificity: 30%)
GP133191 (20) ,
(plant-specificity: 70%)
GP079866 (11) , GP134674 (11) ,
(plant-specificity: 9%)
GP135044 (10) ,
(plant-specificity: 100%)
GP136256 (8) , GP136864 (7) ,
(plant-specificity: 19%)
GP137641 (6) , GP137858 (6) ,
(plant-specificity: 100%)
GP138267 (6) , GP139339 (5) ,
(plant-specificity: 100%)
GP139593 (5) , GP142951 (4) , GP144010 (3) , GP144056 (3) , GP090682 (3) , GP093870 (3) , GP145662 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 3132
Species Count (w/o splice) Count (w/ splice)
14 14
28 28
58 58
43 57
34 34
202 202
51 51
76 76
65 65
71 71
53 53
85 109
60 66
54 54
73 73
59 104
72 75
82 82
82 82
74 74
77 77
68 88
52 52
102 102
87 155
71 71
97 175
130 130
98 98
62 75
126 126
62 62
162 166
44 44
71 76
104 127
80 80


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Short-chain dehydrogenase/reductase SDR
IPR002198
Short-chain dehydrogenase/reductase SDR Family 78 (2448) No
Glucose/ribitol dehydrogenase
IPR002347
Glucose/ribitol dehydrogenase Family 81 (2536) No
Acetoacetyl-CoA reductase
IPR011283
Acetoacetyl-CoA reductase Family 1 (1) Yes
2-deoxy-D-gluconate 3-dehydrogenase
IPR011286
2-deoxy-D-gluconate 3-dehydrogenase Family 1 (2) Yes
3-hydroxybutyrate dehydrogenase
IPR011294
3-hydroxybutyrate dehydrogenase Family 1 (2) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
NAD(P)-binding domain
IPR016040
NAD(P)-binding domain Domain 90 (2814) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016040 IPR002198 IPR002347


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Species
Information to display
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