Family GP000547


Family ID GP000547  add to my list RDF
Family name RING-type E3 ubiquitin ligases family   suggest a name
Cross-reference(s) PMID:
Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis.
15644464
Family Ontology
Close Hide
N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
RING-type E3 ubiquitin ligases family (plant-specificity: 55%)
GP000547 (513)
2 GP016384 (514)
3
(plant-specificity: 40%)
GP118747 (282) , GP041010 (232)
4 GP070411 (229) , GP071157 (146) ,
(plant-specificity: 35%)
GP077447 (135) , GP145027 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 513
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
1 1
5 10
3 3
11 11
5 5
16 16
11 11
7 7
6 6
7 15
7 13
8 8
8 8
13 32
8 11
8 8
10 10
11 11
9 9
8 18
5 5
35 35
16 57
7 7
16 50
5 5
12 12
6 13
15 15
9 9
13 15
4 4
10 18
24 44
9 9


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Zinc finger, RING-type
IPR001841
Zinc finger, RING-type Domain 82 (419) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001841


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
513 350 (68%) 315 (61%) [21; 230; 954] ~265 2124 73




for (default: all):
Species



(click on the button above to get your homolog prediction list)