Family GP000356


Family ID GP000356  add to my list RDF
Family name Purine permease family   suggest a name
Cross-reference(s) PMID:
A new family of high-affinity transporters for adenine, cytosine, and purine derivatives in Arabidopsis.
10662864 PMID:
Transport of cytokinins mediated by purine transporters of the PUP family expressed in phloem, hydathodes, and pollen of Arabidopsis.
12662305
Family Ontology
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N/A
Curation status ?
Found in Tracheophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Purine permease family (plant-specificity: 90%)
GP000356 (509)
2 GP015437 (509)
3 GP040664 (507)
4 GP070479 (299) , GP070009 (208)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 509
Species Count (w/o splice) Count (w/ splice)
6 6
23 23
9 9
10 10
12 12
14 14
9 9
13 19
13 14
14 14
22 22
17 22
14 14
17 17
26 26
28 28
7 7
21 27
17 17
11 11
22 26
18 18
12 15
10 10
13 13
10 11
13 13
16 16
13 13
6 6
12 12
21 24
11 11


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Triose-phosphate transporter domain
IPR004853
Triose-phosphate transporter domain Domain 88 (449) No

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Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004853


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
509 480 (94%) 432 (85%) [56; 364; 721] ~336 1791 240




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