Family GP000483


Family ID GP000483  add to my list RDF
Family name S-ribonuclease binding protein, SBP1, pollen family   suggest a name
Cross-reference(s) PMID:
Identification of a S-ribonuclease-binding protein in Petunia hybrida.
11785938
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
S-ribonuclease binding protein, SBP1, pollen family (plant-specificity: 90%)
GP000483 (504)
2 GP015401 (496) , GP116522 (3)
3 GP040329 (493) , GP128640 (3) , GP129406 (3)
4 GP070137 (370) , GP071679 (115) ,
(plant-specificity: 92%)
GP085960 (5) , GP145049 (3) , GP146210 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 504
Species Count (w/o splice) Count (w/ splice)
5 6
1 1
11 11
7 7
25 25
29 29
16 16
11 11
19 22
11 12
10 10
22 22
18 28
16 16
7 7
11 11
13 13
9 9
13 20
6 6
14 14
19 41
8 8
15 27
8 8
13 13
9 13
19 19
10 10
15 15
7 7
10 12
19 26
9 9


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
S-ribonuclease binding protein, SBP1, pollen
IPR017066
S-ribonuclease binding protein, SBP1, pollen Family 31 (154) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Zinc finger, RING-type
IPR001841
Zinc finger, RING-type Domain 69 (350) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001841 IPR017066


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
504 435 (86%) 417 (83%) [32; 320; 981] ~303 3213 141




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