Family GP000438


Family ID GP000438  add to my list RDF
Family name Cation/H+ exchanger superfamily   suggest a name
Synonym(s) Sodium/hydrogen exchanger
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Cation/H+ exchanger superfamily
GP000438 (549)
2
Na+/H+ exchanger family
GP015616 (417) ,
Salt overly sensitive family
GP017535 (130)
3 GP040546 (319) , GP042295 (130) , GP043018 (98)
4 GP070008 (319) , GP071728 (130) , GP072354 (98)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 549
Species Count (w/o splice) Count (w/ splice)
4 4
9 9
23 23
15 21
9 9
27 27
8 8
16 16
11 11
13 13
10 10
9 15
10 14
8 8
14 14
12 24
8 10
13 13
9 9
10 10
9 9
9 11
11 11
20 20
14 42
9 9
10 21
10 10
14 14
10 17
31 31
15 15
21 21
9 9
11 15
13 15
11 11


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Cation/H+ exchanger, CPA1 family, bacteria
IPR004705
Cation/H+ exchanger, CPA1 family, bacteria Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Cation/H+ exchanger
IPR006153
Cation/H+ exchanger Domain 74 (407) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006153


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Species
Information to display
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(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
549 465 (85%) 294 (54%) [31; 515; 3208] ~496 4781 236