Family GP000552


Family ID GP000552  add to my list RDF
Family name Malate dehydrogenase family   suggest a name
Synonym(s) Malic oxidoreductase , nadp-dependent malic enzyme
Cross-reference(s) PMID:
Nucleotide sequence of a rice cDNA similar to a maize NADP-dependent malic enzyme.
8204833 PMID:
Extensive sequence similarity of the bean CAD4 (cinnamyl-alcohol dehydrogenase) to a maize malic enzyme.
2103472 PMID:
Cloning and analysis of the C4 photosynthetic NAD-dependent malic enzyme of amaranth mitochondria.
8300616
Family Ontology
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molecular_function
malic enzyme activity
GO:0004470 (81%) - malic enzyme activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Malate dehydrogenase family (plant-specificity: 9%)
GP000552 (497)
2 GP015465 (496) ,
(plant-specificity: 100%)
GP112140 (6)
3 GP040126 (496) ,
(plant-specificity: 100%)
GP049615 (6)
4 GP069606 (492) ,
(plant-specificity: 100%)
GP079895 (6) , GP141083 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 497
Species Count (w/o splice) Count (w/ splice)
1 1
7 7
44 44
6 12
4 4
10 10
3 3
6 6
6 6
9 9
7 7
7 12
7 12
9 9
8 8
11 24
8 9
6 6
8 8
8 8
6 6
6 6
7 7
33 33
19 42
5 5
11 32
5 5
15 15
9 18
43 43
13 13
7 11
10 10
8 9
18 30
7 7


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Malic oxidoreductase
IPR001891
Malic oxidoreductase Family 81 (402) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Malic enzyme, N-terminal
IPR012301
Malic enzyme, N-terminal Domain 82 (408) No
Malic enzyme, NAD-binding
IPR012302
Malic enzyme, NAD-binding Domain 81 (405) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR012302
Malic enzyme, conserved site
IPR015884 IPR012301 IPR001891



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
497 396 (80%) 317 (64%) [31; 580; 1517] ~502 2842 453