Family GP000496


Family ID GP000496  add to my list RDF
Family name Target of Myb protein 1 family   suggest a name
Synonym(s) Target of Myb protein, VHS / GAT Domain Containing
Cross-reference(s) PMID:
GGAs: a family of ADP ribosylation factor-binding proteins related to adaptors and associated with the Golgi complex.
10747089 PMID:
The GGAs promote ARF-dependent recruitment of clathrin to the TGN.
11301005
Family Ontology
Close Hide
N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Target of Myb protein 1 family (plant-specificity: 9%)
GP000496 (503)
2 GP015459 (1392) , GP015666 (345) , GP017115 (154) ,
(plant-specificity: 75%)
GP111619 (8)
3 GP040192 (946) , GP040333 (345) , GP041798 (154) ,
(plant-specificity: 97%)
GP122197 (8)
4 GP069999 (343) ,
(plant-specificity: 97%)
GP080074 (343) , GP071211 (146) ,
(plant-specificity: 85%)
GP081390 (8) ,
(plant-specificity: 100%)
GP139290 (5)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 503
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
4 8
6 6
13 13
7 7
16 16
16 16
19 19
15 15
11 18
11 13
12 12
11 11
19 38
11 17
9 9
3 3
8 8
7 7
9 13
9 9
16 16
16 37
7 7
12 35
6 6
14 14
7 14
12 12
17 17
13 14
11 11
11 11
23 37
11 11


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Target of Myb protein 1
IPR014645
Target of Myb protein 1 Family 15 (73) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
VHS
IPR002014
VHS Domain 84 (425) No
GAT
IPR004152
GAT Domain 81 (408) No
ENTH/VHS
IPR008942
ENTH/VHS Domain 84 (424) No
VHS subgroup
IPR018205
VHS subgroup Domain 71 (357) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR008942 IPR002014 IPR004152 IPR018205


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
503 395 (79%) 335 (67%) [44; 424; 1258] ~456 3639 229