Family GP000615


Family ID GP000615  add to my list RDF
Family name Serine/glycine hydroxymethyltransferase family   suggest a name
Comment
Family Ontology
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molecular_function
glycine hydroxymethyltransferase activity
GO:0004372 (71%) - glycine hydroxymethyltransferase activity
biological_process
glycine metabolic process
GO:0006544 (71%) - glycine metabolic process
L-serine metabolic process
GO:0006563 (71%) - L-serine metabolic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Serine/glycine hydroxymethyltransferase family
GP000615 (496)
2 GP015527 (491) ,
(plant-specificity: 100%)
GP113263 (6) , GP027646 (4) , GP116378 (3)
3 GP040191 (490) ,
(plant-specificity: 100%)
GP123585 (6) , GP054344 (4)
4 GP069657 (490) , GP085889 (4) , GP141990 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 496
Species Count (w/o splice) Count (w/ splice)
3 3
3 3
36 36
14 14
5 5
15 15
9 9
12 12
10 10
8 8
7 7
5 9
4 6
5 5
7 7
7 12
4 5
6 6
11 11
7 7
11 11
7 10
5 5
24 24
17 48
7 7
9 48
7 7
11 11
6 13
32 32
10 10
14 17
10 10
8 13
19 33
7 7


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Serine hydroxymethyltransferase
IPR001085
Serine hydroxymethyltransferase Family 91 (453) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
IPR015421
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 Domain 88 (435) No
Pyridoxal phosphate-dependent transferase, major region, subdomain 2
IPR015422
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 Domain 76 (377) No
Pyridoxal phosphate-dependent transferase
IPR015424
Pyridoxal phosphate-dependent transferase Domain 92 (454) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR015421 IPR015424 IPR015422 IPR001085
Serine hydroxymethyltransferase, pyridoxal phosphate binding site
IPR019798



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
496 382 (77%) 301 (61%) [47; 472; 1218] ~432 2282 426