Family GP000538


Family ID GP000538  add to my list RDF
Family name Phytochelatin synthetase like conserved region family   suggest a name
Synonym(s) COBRA
Cross-reference(s) PMID:
The COBRA family of putative GPI-anchored proteins in Arabidopsis. A new fellowship in expansion.
12376623
Family Ontology
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biological_process
cellulose microfibril organization
GO:0010215 (79%) - cellulose microfibril organization
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Phytochelatin synthetase like conserved region family (plant-specificity: 90%)
GP000538 (545)
2
COBRA subfamily 1
GP015788 (392) ,
COBRA subfamily 2
GP016864 (150) , GP116189 (3)
3 GP040439 (392) , GP041499 (150) , GP128874 (3)
4 GP069879 (338) , GP070885 (150) , GP076244 (54) , GP145417 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 545
Species Count (w/o splice) Count (w/ splice)
12 12
4 4
12 12
11 11
12 12
10 10
15 15
10 10
12 15
11 15
13 13
11 11
11 18
11 11
15 15
17 17
20 20
13 13
13 13
10 10
19 19
20 35
13 13
16 22
11 11
16 16
11 11
36 36
29 29
19 19
12 12
15 17
27 32
16 16


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
COBRA, plant
IPR006918
COBRA, plant Family 79 (431) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006918


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
545 503 (92%) 391 (72%) [38; 443; 1204] ~425 4291 286