Family GP000663


Family ID GP000663  add to my list RDF
Family name TRNA delta(2) isopentenylpyrophosphate transferase family   suggest a name
Synonym(s) Adenylate isopentenyltransferase (cytokinin synthase)
Cross-reference(s) PMID:
Structure of tRNA dimethylallyltransferase: RNA modification through a channel.
17292915
Family Ontology
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molecular_function
dimethylallyltranstransferase activity
GO:0004161 (8%) - dimethylallyltranstransferase activity
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
TRNA delta(2) isopentenylpyrophosphate transferase family (plant-specificity: 9%)
GP000663 (421)
2 GP015805 (420)
3 GP040657 (420)
4 GP070122 (369) ,
(plant-specificity: 19%)
GP132518 (50)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 421
Species Count (w/o splice) Count (w/ splice)
5 5
9 9
4 4
11 11
12 12
9 9
5 5
9 9
9 10
3 3
9 9
10 10
7 7
4 4
80 80
65 65
6 6
8 8
6 6
7 7
8 9
31 31
8 9
6 6
8 8
7 7
11 11
6 6
19 19
5 5
7 7
16 16
8 8


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
tRNA isopentenyltransferase
IPR002627
tRNA isopentenyltransferase Family 73 (306) No
Isopentenyl transferase
IPR002648
Isopentenyl transferase Family 8 (35) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002627


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
421 418 (99%) 295 (70%) [47; 284; 810] ~251 1806 212