Family GP000404


Family ID GP000404  add to my list RDF
Family name Phosphate-responsive 1 family   suggest a name
Cross-reference(s) PMID:
Phosphate as a limiting factor for the cell division of tobacco BY-2 cells.
10189698
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Phosphate-responsive 1 family (plant-specificity: 76%)
GP000404 (492)
2 GP015461 (492)
3 GP040357 (490)
4 GP069797 (354) , GP071529 (136)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 492
Species Count (w/o splice) Count (w/ splice)
16 22
8 8
42 42
12 12
19 19
20 20
19 19
7 7
12 13
10 10
9 9
16 16
12 12
12 12
15 15
18 18
13 13
10 10
8 8
8 8
8 8
20 23
10 10
23 24
12 12
19 19
11 11
20 20
12 12
10 10
8 8
11 11
22 22
9 9


Information to display




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Close InterPro family
" !<|r>
IPR Annotation Type % Occurence Specificity
Phosphate-induced protein 1
IPR006766
Phosphate-induced protein 1 Family 95 (465) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006766


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
492 481 (98%) 426 (87%) [41; 316; 808] ~297 2137 226




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