Family GP000887


Family ID GP000887  add to my list RDF
Family name Translation initiation factor eIF-5A family   suggest a name
Comment
Family Ontology
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molecular_function
ribosome binding
GO:0043022 (36%) - ribosome binding
biological_process
translational frameshifting
GO:0006452 (36%) - translational frameshifting
mature ribosome assembly
GO:0042256 (25%) - mature ribosome assembly
positive regulation of translational elongation
GO:0045901 (36%) - positive regulation of translational elongation
positive regulation of translational termination
GO:0045905 (36%) - positive regulation of translational termination
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Translation initiation factor eIF-5A family (plant-specificity: 19%)
GP000887 (483)
2
Translation initiation factor eIF-5A family
GP016012 (346) , GP017021 (135)
3 GP040660 (346) , GP041663 (134) , GP128063 (3)
4 GP070397 (212) , GP071840 (134) , GP071056 (134) , GP144046 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 483
Species Count (w/o splice) Count (w/ splice)
3 3
5 5
26 26
5 7
3 3
18 18
4 4
14 14
11 11
17 17
10 10
10 23
5 5
5 5
10 10
9 21
8 10
6 6
10 10
12 12
6 6
7 11
6 6
30 30
13 38
7 7
11 21
6 6
12 12
8 19
10 10
12 12
11 14
9 9
7 11
22 39
12 12


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Peptidase C15, pyroglutamyl peptidase I
IPR000816
Peptidase C15, pyroglutamyl peptidase I Family 24 (114) Yes
Translation elongation factor IF5A
IPR001884
Translation elongation factor IF5A Family 37 (179) Yes
Peptidase C15, pyroglutamyl peptidase I-like
IPR016125
Peptidase C15, pyroglutamyl peptidase I-like Family 28 (134) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
Translation elongation factor, IF5A, hypusine site
IPR019769 IPR001884



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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
483 378 (78%) 328 (68%) [18; 165; 1803] ~189 3608 66




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