Family GP000476


Family ID GP000476  add to my list RDF
Family name TCP transcription factor family   suggest a name
Cross-reference(s) PMID:
The TCP domain: a motif found in proteins regulating plant growth and development.
10363373
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in Embryophyta plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
TCP transcription factor family (plant-specificity: 100%)
GP000476 (483)
2 GP015377 (481)
3 GP040038 (479)
4 GP069587 (478) , GP144844 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 483
Species Count (w/o splice) Count (w/ splice)
4 4
3 3
11 11
6 6
26 26
27 27
14 14
1 1
12 12
11 11
10 10
10 10
17 18
12 13
11 11
14 14
14 14
6 6
13 15
16 16
11 11
24 33
13 13
20 26
12 12
19 19
12 12
24 24
12 12
10 10
9 9
13 15
27 31
14 14


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Transcription factor, TCP
IPR005333
Transcription factor, TCP Family 92 (443) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Transcription factor TCP subgroup
IPR017887
Transcription factor TCP subgroup Domain 91 (439) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR005333 IPR017887


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
483 458 (95%) 448 (93%) [36; 322; 697] ~319 1981 106


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
483 448 (93%) 2.04659 1.81098 0.468261



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Species



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