Family GP000619


Family ID GP000619  add to my list RDF
Family name Transcription factor jumonji family   suggest a name
Comment
Family Ontology
Close Hide
N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Transcription factor jumonji family (plant-specificity: 50%)
GP000619 (481)
2 GP015689 (471) , GP028608 (4) , GP115218 (4)
3 GP040351 (469) , GP055592 (4) , GP127383 (4)
4 GP069790 (458) ,
(plant-specificity: 100%)
GP080707 (11) , GP087495 (4) , GP143181 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 481
  ` "
Species Count (w/o splice) Count (w/ splice)
1 1
5 5
21 21
8 8
5 5
4 4
13 13
8 8
7 9
11 11
7 7
8 8
8 17
8 8
9 9
10 10
11 11
9 9
6 10
8 8
32 32
10 47
11 11
11 30
5 5
11 11
4 8
14 14
23 23
47 47
9 9
8 13
26 33
16 16


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
JmjC domain
IPR003347
JmjC domain Domain 72 (344) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
Zinc finger, RING-type
IPR001841 IPR003347



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
481 394 (82%) 271 (56%) [48; 855; 5469] ~748 7303 464