Family GP000666


Family ID GP000666  add to my list RDF
Family name Fructokinase related family   suggest a name
Comment
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Fructokinase related family (plant-specificity: 9%)
GP000666 (482)
2
pfkB-type carbohydrate kinase family
GP015671 (366) , GP109249 (58) ,
(plant-specificity: 9%)
GP022209 (51) , GP114389 (4) , GP115728 (3)
3 GP040319 (366) , GP119030 (58) ,
(plant-specificity: 9%)
GP047382 (51) , GP126235 (4) , GP128061 (3)
4 GP070021 (284) , GP077149 (79) , GP132458 (58) ,
(plant-specificity: 9%)
GP077228 (51) , GP141712 (4) , GP144042 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 482
Species Count (w/o splice) Count (w/ splice)
1 1
4 4
3 3
11 13
9 9
28 28
12 12
14 14
15 15
12 12
16 16
7 9
7 7
10 10
7 7
9 18
7 9
9 9
8 8
9 9
9 9
12 13
10 10
17 17
13 26
9 9
12 26
12 12
13 13
7 9
19 19
22 22
18 19
10 10
12 15
25 29
11 11


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Tagatose/fructose phosphokinase
IPR017583
Tagatose/fructose phosphokinase Family 1 (5) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Carbohydrate/puine kinase, PfkB, conserved site
IPR002173
Carbohydrate/puine kinase, PfkB, conserved site Conserved_site 63 (302) No
Carbohydrate kinase PfkB
IPR011611
Carbohydrate kinase PfkB Domain 91 (438) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002173 IPR011611


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
482 429 (89%) 361 (75%) [34; 337; 1073] ~339 2755 223