Family GP000369


Family ID GP000369  add to my list RDF
Family name Glycosyl hydrolases 36 family   suggest a name
Synonym(s) Raffinose synthase
Cross-reference(s) PMID:
Characterization of raffinose synthase from rice (Oryza sativa L. var. Nipponbare).
17206375
Family Ontology
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N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Glycosyl hydrolases 36 family
GP000369 (475)
2 GP015515 (473)
3 GP040178 (473)
4 GP069649 (473) , GP096816 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 475
Species Count (w/o splice) Count (w/ splice)
3 3
8 8
3 3
1 1
23 23
13 13
10 10
7 7
14 14
12 12
8 8
6 7
5 5
14 14
11 29
8 8
10 10
9 9
6 6
11 11
5 10
10 10
18 18
12 26
13 13
19 50
9 9
12 12
7 16
19 19
18 18
23 24
9 9
9 11
15 18
11 11


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Glycosyl hydrolases 36
IPR008811
Glycosyl hydrolases 36 Family 94 (448) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Aldolase-type TIM barrel
IPR013785
Aldolase-type TIM barrel Domain 80 (378) No
Glycoside hydrolase, superfamily
IPR017853
Glycoside hydrolase, superfamily Domain 82 (390) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR013785 IPR017853 IPR008811


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
475 389 (82%) 293 (62%) [56; 740; 1634] ~618 3101 557