Family GP123579


Family ID GP123579  add to my list RDF
Family name Unannotated cluster   suggest a name
Curation status ?
Found in Solanum
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
MADS transcription factor family (plant-specificity: 60%)
GP000028 (4022)
2
(plant-specificity: 98%)
GP112547 (6)
3
(plant-specificity: 98%)
GP123579 (6)
4
(plant-specificity: 98%)
GP138008 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 6
Species Count (w/o splice) Count (w/ splice)
3 3
3 3


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Transcription factor, MADS-box
IPR002100
Transcription factor, MADS-box Domain 83 (5) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002100


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)