Family GP000903


Family ID GP000903  add to my list RDF
Family name Transcription factor IIB (TFIIB) family   suggest a name
Comment this group present Zinc finger, TFIIB-type domain
Family Ontology
Close Hide
molecular_function
binding
GO:0005488 (10%) - binding
TBP-class protein binding
GO:0017025 (38%) - TBP-class protein binding
biological_process
GPI anchor metabolic process
GO:0006505 (6%) - GPI anchor metabolic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Transcription factor IIB (TFIIB) family (plant-specificity: 19%)
GP000903 (474)
2 GP016646 (177) , GP017212 (93) , GP018297 (86) ,
(plant-specificity: 100%)
GP021460 (68) ,
(plant-specificity: 19%)
GP109346 (46)
3 GP041286 (177) , GP041869 (93) , GP042996 (86) ,
(plant-specificity: 100%)
GP046549 (65) ,
(plant-specificity: 19%)
GP119136 (46) , GP128473 (3)
4 GP070682 (176) , GP071280 (93) , GP076277 (65) ,
(plant-specificity: 9%)
GP132468 (57) ,
(plant-specificity: 19%)
GP132551 (46) , GP132790 (29) , GP144775 (3) , GP144860 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 474
Species Count (w/o splice) Count (w/ splice)
3 3
3 3
15 15
7 8
4 4
22 22
5 5
11 11
9 9
13 13
9 9
11 15
11 12
7 7
11 11
10 18
9 10
8 8
9 9
10 10
9 9
12 14
7 7
18 18
11 40
9 9
12 25
9 9
12 12
5 7
29 29
8 8
20 20
7 7
8 11
24 37
10 10


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
474 397 (84%) 327 (69%) [32; 271; 1775] ~358 3842 101