Family GP007063


Family ID GP007063  add to my list RDF
Family name Unannotated cluster   suggest a name
Curation status ?
Found in Theobroma cacao plant-specific
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
(plant-specificity: 100%)
GP007063 (12)
2
(plant-specificity: 100%)
GP031970 (7) ,
(plant-specificity: 100%)
GP027486 (5)
3
(plant-specificity: 100%)
GP059925 (7) ,
(plant-specificity: 100%)
GP054079 (5)
4
(plant-specificity: 100%)
GP092783 (5) ,
(plant-specificity: 100%)
GP085483 (5)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 12
Species Count (w/o splice) Count (w/ splice)
12 12


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
12 12 (100%) 10 (83%) [52; 121; 296] ~138 410 44