Family GP000715


Family ID GP000715  add to my list RDF
Family name yippee-like family   suggest a name
Synonym(s) Ypel
Cross-reference(s) PMID:
Identification and characterization of a novel gene family YPEL in a wide spectrum of eukaryotic species.
15556292
Family Ontology
Close Hide
molecular_function
peptide-methionine (R)-S-oxide reductase activity
GO:0033743 (2%) - peptide-methionine (R)-S-oxide reductase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
yippee-like family (plant-specificity: 9%)
GP000715 (502)
2 GP015596 (425) ,
(plant-specificity: 60%)
GP109128 (76)
3 GP040270 (425) ,
(plant-specificity: 80%)
GP119069 (56) ,
(plant-specificity: 94%)
GP121832 (9) ,
(plant-specificity: 88%)
GP122952 (5) , GP129171 (3)
4 GP069725 (425) ,
(plant-specificity: 99%)
GP132919 (25) ,
(plant-specificity: 95%)
GP133518 (17) ,
(plant-specificity: 94%)
GP135649 (9) ,
(plant-specificity: 96%)
GP138212 (6) ,
(plant-specificity: 88%)
GP139714 (5) , GP141733 (4) , GP142505 (4) , GP145859 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 502
Species Count (w/o splice) Count (w/ splice)
1 1
7 7
6 13
6 6
7 7
4 4
10 10
6 6
5 5
8 8
7 12
5 11
5 5
9 9
8 14
5 5
8 8
45 45
50 50
9 9
8 11
6 6
15 15
11 31
11 11
12 37
11 11
10 10
8 14
24 24
10 10
11 13
8 8
12 14
21 43
9 9


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Yippee/Mis18
IPR004910
Yippee/Mis18 Family 85 (428) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004910


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
502 398 (79%) 356 (71%) [30; 119; 1578] ~141 2844 85




for (default: all):
Species



(click on the button above to get your homolog prediction list)