Family GP000501


Family ID GP000501  add to my list RDF
Family name K Homology domain containing family   suggest a name
Cross-reference(s) PMID:
SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11, is involved in flowering time control in rice.
18586868
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
K Homology domain containing family (plant-specificity: 19%)
GP000501 (478)
2 GP015459 (1392) ,
KH domain-containing protein family
GP015663 (406) ,
(plant-specificity: 40%)
GP020200 (64) , GP117568 (3)
3 GP040192 (946) , GP040185 (325) , GP043900 (81) ,
(plant-specificity: 30%)
GP046262 (62) , GP058020 (3)
4
(plant-specificity: 97%)
GP080074 (343) , GP069652 (325) , GP073405 (81) ,
(plant-specificity: 30%)
GP077132 (62) , GP090676 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 478
Species Count (w/o splice) Count (w/ splice)
2 2
6 6
6 6
6 6
6 6
25 25
7 7
17 17
11 11
19 19
16 16
9 15
8 14
5 5
10 10
14 28
11 11
7 7
9 9
9 9
7 7
7 11
8 8
17 17
12 29
5 5
12 32
7 7
10 10
6 12
31 31
6 6
11 15
7 7
8 8
17 33
11 11


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
K Homology domain
IPR004087
K Homology domain Domain 74 (355) No

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Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004087


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
478 385 (81%) 344 (72%) [37; 286; 2057] ~385 3785 161




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