Family GP000516


Family ID GP000516  add to my list RDF
Family name ALFIN transcription factor family   suggest a name
Comment
Family Ontology
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molecular_function
histone binding
GO:0042393 (92%) - histone binding
Curation status ?
Found in Viridiplantae plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
ALFIN transcription factor family (plant-specificity: 100%)
GP000516 (468)
2
ALFIN transcription factor family
GP015430 (462) ,
(plant-specificity: 100%)
GP112095 (6)
3 GP040093 (462) ,
(plant-specificity: 100%)
GP122897 (6)
4 GP069584 (460) ,
(plant-specificity: 100%)
GP138297 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 468
Species Count (w/o splice) Count (w/ splice)
2 2
4 4
7 10
3 3
16 16
3 3
23 23
18 18
15 15
11 11
10 14
12 14
8 8
19 19
22 47
14 15
6 6
7 7
12 12
7 7
7 10
4 4
9 9
13 39
6 6
9 25
5 5
7 7
6 9
17 17
10 10
11 11
7 7
10 12
21 30
13 13


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Alfin
IPR021998
Alfin Family 92 (431) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Zinc finger, PHD-type
IPR001965
Zinc finger, PHD-type Domain 77 (360) No
Zinc finger, FYVE/PHD-type
IPR011011
Zinc finger, FYVE/PHD-type Domain 79 (368) No
Zinc finger, RING/FYVE/PHD-type
IPR013083
Zinc finger, RING/FYVE/PHD-type Domain 78 (367) No
Zinc finger, PHD-type, conserved site
IPR019786
Zinc finger, PHD-type, conserved site Conserved_site 75 (352) No
Zinc finger, PHD-finger
IPR019787
Zinc finger, PHD-finger Domain 77 (360) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR013083 IPR019786 IPR001965 IPR011011 IPR019787 IPR021998


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
468 374 (80%) 328 (70%) [36; 249; 1166] ~231 3133 221




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