Family GP000470


Family ID GP000470  add to my list RDF
Family name Polyprenyl synthetase family   suggest a name
Synonym(s) Geranylgeranyl pyrophosphate synthase family (ggpp)
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Polyprenyl synthetase family
GP000470 (471)
2
Geranylgeranyl pyrophosphate synthetase subfamily
GP016322 (251) ,
Octaprenyl-diphosphate synthase
GP016596 (220)
3 GP040949 (251) , GP042303 (220)
4 GP070357 (251) , GP132278 (121) , GP072028 (99)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 471
Species Count (w/o splice) Count (w/ splice)
3 3
3 3
51 51
7 8
7 7
31 31
6 6
11 11
10 10
24 24
8 8
8 12
7 7
6 6
13 13
10 23
5 5
7 7
8 8
9 9
8 8
15 17
7 7
27 27
19 30
10 10
14 20
7 7
8 8
7 7
17 17
11 11
7 7
7 7
9 9
16 20
7 7


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Polyprenyl synthetase
IPR000092
Polyprenyl synthetase Family 88 (416) No
Solanesyl diphosphate synthase
IPR014120
Solanesyl diphosphate synthase Family 13 (62) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Terpenoid synthase
IPR008949
Terpenoid synthase Domain 92 (434) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR008949 IPR000092


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
471 430 (91%) 374 (79%) [35; 340; 671] ~315 1643 171




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