Family GP000724


Family ID GP000724  add to my list RDF
Family name Unknown function DUF1685 family   suggest a name
Comment
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Unknown function DUF1685 family (plant-specificity: 98%)
GP000724 (470)
2
Unknown function DUF1685 family
GP016058 (252) , GP017968 (124) ,
(plant-specificity: 100%)
GP021209 (54) ,
(plant-specificity: 100%)
GP023375 (30) , GP028365 (4) , GP114198 (4)
3 GP041683 (252) , GP042646 (105) ,
(plant-specificity: 100%)
GP047301 (46) ,
(plant-specificity: 100%)
GP119875 (19) ,
(plant-specificity: 100%)
GP054261 (21) ,
(plant-specificity: 100%)
GP120757 (9) ,
(plant-specificity: 100%)
GP052817 (8) , GP055328 (4) , GP125955 (4)
4 GP071740 (109) , GP072423 (103) , GP073030 (77) ,
(plant-specificity: 100%)
GP075683 (62) ,
(plant-specificity: 100%)
GP077706 (41) ,
(plant-specificity: 100%)
GP133284 (19) ,
(plant-specificity: 100%)
GP133573 (16) ,
(plant-specificity: 100%)
GP135397 (9) ,
(plant-specificity: 100%)
GP083886 (8) ,
(plant-specificity: 100%)
GP085722 (5) ,
(plant-specificity: 100%)
GP139127 (5) , GP141261 (4) , GP087177 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 470
Species Count (w/o splice) Count (w/ splice)
2 4
6 6
27 27
7 7
21 21
23 23
12 12
4 4
12 12
8 8
11 11
13 13
16 22
9 9
8 8
10 10
10 10
7 7
16 22
8 8
17 17
23 36
9 9
13 21
8 8
16 16
14 17
18 18
12 12
12 12
11 11
13 14
22 24
11 11


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Protein of unknown function DUF1685
IPR012881
Protein of unknown function DUF1685 Family 68 (320) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR012881


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Species

Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family smquengeS Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
470 429 (91%) 418 (89%) [32; 212; 684] ~222 2280 79


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
470 418 (89%) 1.4563 1.27909 0.588623



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