Family GP000618


Family ID GP000618  add to my list RDF
Family name Transcription factor bHLH family   suggest a name
Family Ontology
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N/A
Curation status ?
Found in Plant-specific plant-specific
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Transcription factor bHLH family (plant-specificity: 100%)
GP000618 (2684)
2 GP015599 (581) , GP015514 (413) , GP015691 (379) , GP015618 (367) , GP015726 (314) , GP016563 (170) , GP017962 (99) ,
(plant-specificity: 100%)
GP018952 (90) , GP017983 (81) ,
(plant-specificity: 100%)
GP022618 (53) ,
(plant-specificity: 100%)
GP109641 (33) ,
(plant-specificity: 100%)
GP110537 (13) ,
(plant-specificity: 100%)
GP110695 (13) ,
(plant-specificity: 100%)
GP112023 (7) ,
(plant-specificity: 100%)
GP112045 (7) ,
(plant-specificity: 100%)
GP112049 (11) ,
(plant-specificity: 100%)
GP112108 (7) ,
(plant-specificity: 100%)
GP112525 (6) ,
(plant-specificity: 100%)
GP113165 (5) , GP027970 (5) ,
(plant-specificity: 100%)
GP027731 (5) , GP114601 (4) , GP114970 (3) , GP028385 (3) , GP116244 (3) , GP036501 (3) , GP116530 (3)
3 GP040176 (413) , GP040372 (379) , GP041061 (292) , GP040394 (314) , GP041893 (233) , GP041219 (169) , GP042132 (129) , GP042358 (111) , GP042641 (94) , GP044163 (90) , GP043398 (81) , GP043518 (94) ,
(plant-specificity: 100%)
GP047451 (57) ,
(plant-specificity: 100%)
GP047868 (48) ,
(plant-specificity: 100%)
GP119269 (33) ,
(plant-specificity: 100%)
GP120622 (13) , GP121301 (10) ,
(plant-specificity: 100%)
GP050155 (11) ,
(plant-specificity: 100%)
GP122199 (8) ,
(plant-specificity: 100%)
GP122761 (8) ,
(plant-specificity: 100%)
GP122775 (7) ,
(plant-specificity: 100%)
GP122816 (7) ,
(plant-specificity: 100%)
GP122921 (7) ,
(plant-specificity: 100%)
GP123501 (5) ,
(plant-specificity: 100%)
GP123553 (6) ,
(plant-specificity: 100%)
GP124486 (5) ,
(plant-specificity: 100%)
GP124487 (5) ,
(plant-specificity: 100%)
GP054794 (5) , GP054539 (5) , GP054816 (5) , GP125946 (4) , GP054495 (4) , GP126575 (4) , GP055349 (3) , GP058296 (3) , GP128990 (3) , GP059110 (3) , GP065485 (3) , GP129390 (3) , GP129421 (3) , GP130427 (3) , GP130443 (3)
4 GP069811 (396) , GP069828 (373) , GP069839 (314) , GP071023 (233) , GP071110 (159) , GP071560 (128) , GP071468 (126) , GP071429 (119) , GP071851 (111) , GP073143 (86) , GP074061 (85) , GP072905 (78) ,
(plant-specificity: 100%)
GP079810 (52) ,
(plant-specificity: 100%)
GP077676 (51) , GP076346 (43) ,
(plant-specificity: 100%)
GP132597 (41) ,
(plant-specificity: 100%)
GP079465 (36) ,
(plant-specificity: 100%)
GP132717 (33) ,
(plant-specificity: 100%)
GP133477 (17) ,
(plant-specificity: 100%)
GP134164 (13) ,
(plant-specificity: 100%)
GP080560 (11) , GP134943 (10) ,
(plant-specificity: 100%)
GP081281 (8) ,
(plant-specificity: 100%)
GP135985 (8) ,
(plant-specificity: 100%)
GP136135 (8) ,
(plant-specificity: 100%)
GP136703 (7) ,
(plant-specificity: 100%)
GP136913 (7) ,
(plant-specificity: 100%)
GP136960 (7) ,
(plant-specificity: 100%)
GP137126 (7) ,
(plant-specificity: 100%)
GP137960 (6) ,
(plant-specificity: 100%)
GP082734 (6) ,
(plant-specificity: 100%)
GP139216 (5) ,
(plant-specificity: 100%)
GP139232 (5) , GP139235 (5) ,
(plant-specificity: 100%)
GP139278 (5) ,
(plant-specificity: 100%)
GP139279 (5) ,
(plant-specificity: 100%)
GP086542 (5) , GP084278 (5) , GP086563 (5) , GP140875 (4) , GP141251 (4) , GP141252 (4) , GP086156 (4) , GP142012 (4) , GP088204 (4) , GP144707 (3) , GP144881 (3) , GP087205 (3) , GP091003 (3) , GP145606 (3) , GP091888 (3) , GP099858 (3) , GP146191 (3) , GP146233 (3) , GP147475 (3) , GP147495 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 2684
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
65 77
30 30
117 117
43 43
109 109
99 99
71 71
59 59
69 77
54 59
56 56
88 88
88 133
77 81
53 53
57 57
66 66
51 51
48 66
41 41
57 57
80 132
41 41
75 126
52 52
73 73
42 56
121 121
66 66
110 113
58 58
76 89
146 185
78 78


Information to display




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Close InterPro family

No IPR family


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IPR Annotation Type % Occurence Specificity
Myc-type, basic helix-loop-helix (bHLH) domain
IPR011598
Myc-type, basic helix-loop-helix (bHLH) domain Domain 87 (2341) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011598


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Species
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