Family GP000883


Family ID GP000883  add to my list RDF
Family name Ribonuclease ii and r family   suggest a name
Synonym(s) Exoribonuclease
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Ribonuclease ii and r family (plant-specificity: 40%)
GP000883 (471)
2 GP016737 (182) ,
(plant-specificity: 100%)
GP020529 (110) ,
(plant-specificity: 33%)
GP019662 (79) ,
(plant-specificity: 100%)
GP022380 (41) ,
(plant-specificity: 100%)
GP022477 (35) ,
(plant-specificity: 100%)
GP112482 (8) ,
(plant-specificity: 100%)
GP112835 (6) , GP116338 (3) , GP116430 (3)
3
(plant-specificity: 9%)
GP044054 (94) , GP042950 (88) , GP044557 (79) ,
(plant-specificity: 100%)
GP047755 (41) ,
(plant-specificity: 100%)
GP047697 (35) ,
(plant-specificity: 100%)
GP048757 (27) ,
(plant-specificity: 75%)
GP048226 (26) ,
(plant-specificity: 100%)
GP050278 (27) ,
(plant-specificity: 100%)
GP048648 (17) ,
(plant-specificity: 100%)
GP052003 (8) ,
(plant-specificity: 100%)
GP123999 (6) , GP126074 (4) , GP128598 (3) , GP129120 (3) , GP129258 (3)
4 GP073580 (94) , GP072610 (86) , GP074128 (75) ,
(plant-specificity: 100%)
GP077582 (35) ,
(plant-specificity: 100%)
GP077835 (34) , GP078235 (26) ,
(plant-specificity: 100%)
GP133458 (17) ,
(plant-specificity: 100%)
GP078738 (17) ,
(plant-specificity: 100%)
GP134340 (12) ,
(plant-specificity: 100%)
GP134992 (10) ,
(plant-specificity: 100%)
GP134997 (10) ,
(plant-specificity: 100%)
GP084215 (8) ,
(plant-specificity: 100%)
GP136706 (7) ,
(plant-specificity: 100%)
GP138558 (6) , GP141128 (4) , GP141444 (4) , GP144236 (3) , GP144964 (3) , GP145785 (3) , GP145999 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 471
Species Count (w/o splice) Count (w/ splice)
3 3
5 5
38 38
4 5
4 4
31 31
6 6
25 25
11 11
13 13
10 10
11 15
8 10
12 12
12 12
11 25
11 11
10 10
11 11
10 10
8 8
5 7
6 6
14 14
9 16
8 8
11 22
7 7
7 7
7 9
20 20
10 10
15 17
12 12
8 10
16 23
8 8


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Capsid scaffolding protein GpO
IPR009228
Capsid scaffolding protein GpO Family 1 (1) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
471 417 (89%) 330 (70%) [47; 272; 2040] ~459 3135 118