Family GP008028


Family ID GP008028  add to my list RDF
Family name Plant self-incompatibility response family   suggest a name
Synonym(s) Defensin-like protein
Comment
Curation status ?
Found in Arabidopsis thaliana plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Plant self-incompatibility response family (plant-specificity: 100%)
GP008028 (20)
2
(plant-specificity: 100%)
GP029369 (7) ,
(plant-specificity: 100%)
GP032408 (5) , GP029330 (4)
3
(plant-specificity: 100%)
GP056507 (5) , GP060421 (4) , GP056463 (3)
4
(plant-specificity: 100%)
GP088492 (5) , GP093332 (4) , GP088438 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 20
Species Count (w/o splice) Count (w/ splice)
20 20


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Plant self-incompatibility response
IPR010682
Plant self-incompatibility response Family 70 (14) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR010682


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
20 20 (100%) 20 (100%) [86; 94; 109] ~94 142 57


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
20 20 (100%) 1.35509 1.09486 0.541844



for (default: all):
Species



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