Family GP000650


Family ID GP000650  add to my list RDF
Family name Paired amphipathic helix protein Sin3-like family   suggest a name
Cross-reference(s) PMID:
PAH-domain-specific interactions of the Arabidopsis transcription coregulator SIN3-LIKE1 (SNL1) with telomere-binding protein 1 and ALWAYS EARLY2 Myb-DNA binding factors.
19962994
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Paired amphipathic helix protein Sin3-like family (plant-specificity: 9%)
GP000650 (467)
2 GP015751 (386) ,
(plant-specificity: 98%)
GP022072 (33) ,
(plant-specificity: 100%)
GP022529 (25) ,
(plant-specificity: 100%)
GP024304 (11) ,
(plant-specificity: 100%)
GP028338 (5) , GP033805 (3)
3 GP040429 (380) ,
(plant-specificity: 98%)
GP047912 (31) ,
(plant-specificity: 100%)
GP047769 (25) ,
(plant-specificity: 100%)
GP049983 (11) ,
(plant-specificity: 100%)
GP055286 (5) , GP128664 (4) , GP062371 (3)
4 GP069899 (378) , GP078249 (23) ,
(plant-specificity: 100%)
GP080369 (11) ,
(plant-specificity: 100%)
GP136227 (8) ,
(plant-specificity: 60%)
GP137080 (7) ,
(plant-specificity: 100%)
GP097924 (7) ,
(plant-specificity: 100%)
GP139479 (5) ,
(plant-specificity: 100%)
GP087124 (5) , GP084614 (4) , GP141504 (4) , GP096219 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 467
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
13 13
10 10
3 3
8 8
2 2
10 10
8 8
4 4
7 7
8 12
5 7
6 6
16 16
11 23
6 6
2 2
13 13
18 18
4 4
27 34
14 14
12 12
11 37
5 5
11 23
6 6
10 10
2 9
10 10
9 9
73 73
7 7
6 8
11 28
8 8


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Paired amphipathic helix
IPR003822
Paired amphipathic helix Repeat 78 (362) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR003822


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
467 378 (81%) 304 (65%) [26; 449; 2802] ~700 5454 129