Family GP004999


Family ID GP004999  add to my list RDF
Family name Unannotated cluster   suggest a name
Curation status ?
Found in Theobroma cacao plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
(plant-specificity: 100%)
GP004999 (19)
2
(plant-specificity: 100%)
GP022824 (19)
3
(plant-specificity: 100%)
GP048118 (19)
4 GP078071 (19)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 19
Species Count (w/o splice) Count (w/ splice)
19 19


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
19 19 (100%) 19 (100%) [50; 67; 103] ~64 109 66


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
19 19 (100%) 0.320856 0.273517 0.0982623



for (default: all):
Species



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