Family GP000514


Family ID GP000514  add to my list RDF
Family name Carbonic anhydrase family   suggest a name
Synonym(s) Carbonate dehydratase
Cross-reference(s) PMID:
Characterization and expression of two cDNAs encoding carbonic anhydrase in Arabidopsis thaliana.
7520589 PMID:
Arabidopsis thaliana carbonic anhydrase: cDNA sequence and effect of CO2 on mRNA levels.
1463847
Family Ontology
Close Hide
biological_process
carbon utilization
GO:0015976 (85%) - carbon utilization
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Carbonic anhydrase family
GP000514 (456)
2 GP015436 (456)
3 GP040091 (456)
4 GP069583 (452)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 456
Species Count (w/o splice) Count (w/ splice)
5 5
7 7
6 11
6 6
12 12
2 2
8 8
8 8
4 4
4 4
2 9
3 6
6 6
4 4
5 26
5 13
3 3
5 5
4 4
9 9
6 18
6 6
51 51
10 34
9 9
8 41
6 6
19 19
4 15
19 19
14 14
8 17
5 5
7 14
13 30
6 6


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Carbonic anhydrase
IPR001765
Carbonic anhydrase Family 92 (421) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Carbonic anhydrase, prokaryotic-like, conserved site
IPR015892
Carbonic anhydrase, prokaryotic-like, conserved site Conserved_site 85 (386) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001765 IPR015892


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
456 299 (66%) 270 (59%) [31; 261; 731] ~259 1913 180


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
456 270 (59%) 1.0822 1.02518 0.367516



for (default: all):
Species



(click on the button above to get your homolog prediction list)