Family GP013577


Family ID GP013577  add to my list RDF
Family name Peptidoglycan-associated lipoprotein   suggest a name
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Peptidoglycan-associated lipoprotein
GP013577 (16)
2 GP037986 (12) , GP037969 (4)
3 GP067368 (12)
4 GP102085 (12)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 16
Species Count (w/o splice) Count (w/ splice)
2 2
4 4
7 7
3 3


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Peptidoglycan-associated lipoprotein
IPR014169
Peptidoglycan-associated lipoprotein Family 19 (3) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
Outer membrane protein, OmpA/MotB, C-terminal
IPR006665
Outer membrane protein, bacterial
IPR006664



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
16 16 (100%) 15 (94%) [57; 211; 585] ~217 776 81


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
16 15 (94%) 1.26011 1.23213 0.338304



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