Family GP000609


Family ID GP000609  add to my list RDF
Family name Metal-dependent amidase/aminoacylase/carboxypeptidase family   suggest a name
Synonym(s) IAA-amino acid hydrolase ILR1-like, peptidase m20
Cross-reference(s) PMID:
ILR1, an amidohydrolase that releases active indole-3-acetic acid from conjugates.
7792599 PMID:
Characterization of a family of IAA-amino acid conjugate hydrolases from Arabidopsis.
11923288
Family Ontology
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N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Metal-dependent amidase/aminoacylase/carboxypeptidase family (plant-specificity: 19%)
GP000609 (444)
2 GP015517 (405) ,
(plant-specificity: 80%)
GP109052 (86) ,
(plant-specificity: 100%)
GP022704 (38)
3 GP040181 (405) ,
(plant-specificity: 80%)
GP118909 (73) ,
(plant-specificity: 100%)
GP047981 (38)
4 GP069656 (403) ,
(plant-specificity: 100%)
GP077903 (38) ,
(plant-specificity: 100%)
GP133646 (16)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 444
Species Count (w/o splice) Count (w/ splice)
4 4
7 7
3 3
4 4
16 16
10 10
9 9
8 8
13 13
10 10
11 11
9 10
11 11
16 16
10 25
11 12
7 7
10 10
8 8
9 9
8 8
15 15
27 27
9 24
9 9
11 15
8 8
13 13
8 12
33 33
12 12
20 20
8 8
7 7
19 22
8 8


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Peptidase M20
IPR002933
Peptidase M20 Family 80 (355) No
Amidohydrolase
IPR017439
Amidohydrolase Family 72 (318) Yes
Protein of unknown function DUF2334
IPR018763
Protein of unknown function DUF2334 Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Peptidase M20, dimerisation domain
IPR011650
Peptidase M20, dimerisation domain Domain 74 (330) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011650 IPR017439 IPR002933


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
444 401 (90%) 310 (70%) [58; 424; 2304] ~371 6213 342